- Explore genetic signatures, genealogy and phenotypic changes of soybean breeding
- Ultimate task is to understand how the genome changed with the breeding of lines, and how this affected other traits
2016-07-13
What does copy number variation mean?
Open up the copy number variation (CNV) app on your computer http://shiny.soybase.org/CNV/
or
http://srvanderplas.com/Shiny/SoybeanApp/CNV/
(It might be best to share one computer between three or four people, so that the servers don't get overloaded.)
(Hint: Use the Field Trials tab.)
Conrad a descendant of Essex?Essex?Illini related to Lawrence?(Hint: Use the Genealogy tab.)
Find some locations on the genome that Lawrence might have inherited from Illini.
(Hint: Use the Barcode plots.)
Finding a statistical answer to a matching problem: http://erichare.shinyapps.io/x3prplus
Author: Eric Hare
https://erichare.shinyapps.io/pelica/

https://erichare.shinyapps.io/gglogo/

https://erichare.shinyapps.io/x3prplus/

Pick one of the three shiny apps and explore it for yourself:
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